Pfam - Scop comparison

Appendices to Lindahl and Elofsson

Identifications of related proteins on family, superfamily and fold level.

Here are all necessare informationd to reproduce the results from this article.

• The .tar.gz files are the complete set of multiple sequence alignments, predicted secondary structures and sequences.
• The postscript and pdf files are preprints and will be removed after the paper is printed.
• the .pl files are scripts that can be used to calculate spec-sens curves and tophits.

Files related to paper Lindahl and Elofsson

files .ss3.gz are spec-sens files and .dat.gz are raw data files

tar archive is all MSA alignments

• multiple_alignments.tar.gz
• erikl_threading.ps
• erikl_threading.pdf
• secondary_predicted.tar.gz
• sequences.tar.gz
• figure1.ps
• tophits2.pl
• spec_sens2.pl
• figure2.ps
• erikl_threading.tex
• multi.bib
• discussion_review.tex
• methods_review.tex
• results_review.tex
• introduction_erikl3.tex
• figure3.ps
• figure4.ps
• bar
• conclusions_erikl3.tex
• discussion_erikl3.tex
• figures.tex
• methods_erikl3.tex
• results_erikl3.tex
• seq_blast.dat.gz
• seq_blast.ss3.gz
• seq_blast2+blastpgp_ave.ss3.gz
• seq_blast2+blastpgp_max.ss3.gz
• seq_blast2+sam_ave.ss3.gz
• seq_blast2.dat.gz
• seq_blast2_filtered.dat.gz
• seq_blast2_sort.dat.gz
• seq_blast2_sort.ss3.gz
• seq_blastpgp.old.dat.gz
• seq_blastpgp.ss3.gz
• seq_combined_allseq.ss3.gz
• seq_fasta.dat.gz
• seq_fasta2.dat.gz
• seq_hmm-2.1_blast.ss3.gz
• seq_hmm-2.1_hssp.ss3.gz
• seq_sam.ss3.gz
• seq_sam_blast.ss3.gz
• seq_sam_blast_new.ss3.gz
• seq_sam_new.ss3.gz
• seq_ssearch.ss3.gz
• seq_sshmm_new.ss3.gz
• seq_sshmm_top.ss3.gz
• seq_threader.noshuff.ss3.gz
• seq_threader.shuff.ss3.gz
• seq_threader.ss.noshuff.ss3.gz
• slx_files.tar.gz
• tables.tex
• foo