Publications

Evaluating deep learning based structure prediction methods on antibody-antigen complexes

Fromm S, Ludaic M, Elofsson A

Bioinformatics (Oxford, England) · Year: 2026 · PMID: 41863324 · Citations: 8 · Source: pubmed

A deep learning framework for comprehensive prediction of human RNA G-quadruplex-binding proteins

Rosignoli S, Taraglio S, Di Luzio F, Lustrino E, Marzella D, Elofsson A, Panella M, Paiardini A

Bioinformatics (Oxford, England) · Year: 2026 · PMID: 41712756 · Citations: 0 · Source: pubmed

Blind Prediction of Complex Water and Ion Ensembles Around RNA in CASP16

Kretsch RC, Posani E, Baulin EF, Bujnicki JM, Bussi G, Cheatham TE 3rd, Chen SJ, Elofsson A, Farsani MA, Fisher ON, Gromiha MM, Gupta A, Hamada M, Harini K, Hu G, Huang D, Iwakiri J, Jain A, Kagaya Y, Kihara D, et al.

Proteins · Year: 2026 · PMID: 41204761 · Citations: 3 · Source: pubmed

AlphaFold3 at CASP16

Elofsson A

Proteins · Year: 2026 · PMID: 40851426 · Citations: 18 · Source: pubmed

Engaging the Community: CASP Special Interest Groups

Elofsson A, Kretsch RC, Magnus M, Montelione GT

Proteins · Year: 2026 · PMID: 40304050 · Citations: 3 · Source: pubmed

Blind prediction of complex water and ion ensembles around RNA in CASP16

Kretsch RC, Posani E, Baulin EF, Bujnicki JM, Bussi G, Cheatham TE 3rd, Chen SJ, Elofsson A, Farsani MA, Fisher ON, Gromiha MM, Gupta A, Hamada M, Harini K, Hu G, Huang D, Iwakiri J, Jain A, Kagaya Y, Kihara D, et al.

bioRxiv : the preprint server for biology · Year: 2025 · PMID: 41279659 · Citations: 3 · Source: pubmed

Structural host-virus interactome profiling of intact infected cells

Bogdanow B, Mühlberg L, Gruska I, Vetter B, Ruta J, Elofsson A, Wiebusch L, Liu F

Nature communications · Year: 2025 · PMID: 40691152 · Citations: 9 · Source: pubmed

Editorial overview: Sequences and topology (2025)

Elofsson A, Kolodny R

Current opinion in structural biology · Year: 2025 · PMID: 40602329 · Citations: 0 · Source: pubmed

Unlocking protein networks with Predictomes: The SPOC advantage

Elofsson A

Molecular cell · Year: 2025 · PMID: 40118037 · Citations: 0 · Source: pubmed

Native Mass Spectrometry Captures the Conformational Plasticity of Proteins with Low-Complexity Domains

Osterholz H, Stevens A, Abramsson ML, Lama D, Brackmann K, Rising A, Elofsson A, Marklund EG, Deindl S, Leppert A, Landreh M

JACS Au · Year: 2025 · PMID: 39886581 · Citations: 9 · Source: pubmed

Redesigning error control in cross-linking mass spectrometry enables more robust and sensitive protein-protein interaction studies

Bogdanow B, Ruwolt M, Ruta J, Mühlberg L, Wang C, Zeng WF, Elofsson A, Liu F

Molecular systems biology · Year: 2025 · PMID: 39653847 · Citations: 2 · Source: pubmed

MoLPC2: improved prediction of large protein complex structures and stoichiometry using Monte Carlo Tree Search and AlphaFold2

Chim HY, Elofsson A

Bioinformatics (Oxford, England) · Year: 2024 · PMID: 38781500 · Citations: 13 · Source: pubmed

Deep learning insights into the architecture of the mammalian egg-sperm fusion synapse

Elofsson A, Han L, Bianchi E, Wright GJ, Jovine L

eLife · Year: 2024 · PMID: 38666763 · Citations: 34 · Source: pubmed

M-Ionic: prediction of metal-ion-binding sites from sequence using residue embeddings

Shenoy A, Kalakoti Y, Sundar D, Elofsson A

Bioinformatics (Oxford, England) · Year: 2024 · PMID: 38175787 · Citations: 27 · Source: pubmed

Peptide binder design with inverse folding and protein structure prediction

Bryant P, Elofsson A

Communications chemistry · Year: 2023 · PMID: 37880344 · Citations: 36 · Source: pubmed

A STRP-ed definition of Structured Tandem Repeats in Proteins

Monzon AM, Arrías PN, Elofsson A, Mier P, Andrade-Navarro MA, Bevilacqua M, Clementel D, Bateman A, Hirsh L, Fornasari MS, Parisi G, Piovesan D, Kajava AV, Tosatto SCE

Journal of structural biology · Year: 2023 · PMID: 37652396 · Citations: 13 · Source: pubmed

The structural basis of hyperpromiscuity in a core combinatorial network of type II toxin-antitoxin and related phage defense systems

Ernits K, Saha CK, Brodiazhenko T, Chouhan B, Shenoy A, Buttress JA, Duque-Pedraza JJ, Bojar V, Nakamoto JA, Kurata T, Egorov AA, Shyrokova L, Johansson MJO, Mets T, Rustamova A, Džigurski J, Tenson T, Garcia-Pino A, Strahl H, Elofsson A, et al.

Proceedings of the National Academy of Sciences of the United States of America · Year: 2023 · PMID: 37556498 · Citations: 47 · Source: pubmed

Evaluation of AlphaFold-Multimer prediction on multi-chain protein complexes

Zhu W, Shenoy A, Kundrotas P, Elofsson A

Bioinformatics (Oxford, England) · Year: 2023 · PMID: 37405868 · Citations: 191 · Source: pubmed

Multiplexed selectivity screening of anti-GPCR antibodies

Dahl L, Kotliar IB, Bendes A, Dodig-Crnković T, Fromm S, Elofsson A, Uhlén M, Sakmar TP, Schwenk JM

Science advances · Year: 2023 · PMID: 37134173 · Citations: 23 · Source: pubmed

Progress at protein structure prediction, as seen in CASP15

Elofsson A

Current opinion in structural biology · Year: 2023 · PMID: 37060758 · Citations: 119 · Source: pubmed

Insights into the structure-function relationship of the NorQ/NorD chaperones from Paracoccus denitrificans reveal shared principles of interacting MoxR AAA+/VWA domain proteins

Kahle M, Appelgren S, Elofsson A, Carroni M, Ädelroth P

BMC biology · Year: 2023 · PMID: 36855050 · Citations: 9 · Source: pubmed

A "grappling hook" interaction connects self-assembly and chaperone activity of Nucleophosmin 1

Saluri M, Leppert A, Gese GV, Sahin C, Lama D, Kaldmäe M, Chen G, Elofsson A, Allison TM, Arsenian-Henriksson M, Johansson J, Lane DP, Hällberg BM, Landreh M

PNAS nexus · Year: 2023 · PMID: 36743470 · Citations: 20 · Source: pubmed

AFTGAN: prediction of multi-type PPI based on attention free transformer and graph attention network

Kang Y, Elofsson A, Jiang Y, Huang W, Yu M, Li Z

Bioinformatics (Oxford, England) · Year: 2023 · PMID: 36692145 · Citations: 37 · Source: pubmed

Towards a structurally resolved human protein interaction network

Burke DF, Bryant P, Barrio-Hernandez I, Memon D, Pozzati G, Shenoy A, Zhu W, Dunham AS, Albanese P, Keller A, Scheltema RA, Bruce JE, Leitner A, Kundrotas P, Beltrao P, Elofsson A

Nature structural & molecular biology · Year: 2023 · PMID: 36690744 · Citations: 2 · Source: pubmed

A structural biology community assessment of AlphaFold2 applications

Akdel M, Pires DEV, Pardo EP, Jänes J, Zalevsky AO, Mészáros B, Bryant P, Good LL, Laskowski RA, Pozzati G, Shenoy A, Zhu W, Kundrotas P, Serra VR, Rodrigues CHM, Dunham AS, Burke D, Borkakoti N, Velankar S, Frost A, et al.

Nature structural & molecular biology · Year: 2022 · PMID: 36344848 · Citations: 712 · Source: pubmed

Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search

Bryant P, Pozzati G, Zhu W, Shenoy A, Kundrotas P, Elofsson A

Nature communications · Year: 2022 · PMID: 36224222 · Citations: 0 · Source: pubmed

Mass Spectrometry and Machine Learning Reveal Determinants of Client Recognition by Antiamyloid Chaperones

Österlund N, Vosselman T, Leppert A, Gräslund A, Jörnvall H, Ilag LL, Marklund EG, Elofsson A, Johansson J, Sahin C, Landreh M

Molecular & cellular proteomics : MCP · Year: 2022 · PMID: 36115577 · Citations: 10 · Source: pubmed

Complementing machine learning-based structure predictions with native mass spectrometry

Allison TM, Degiacomi MT, Marklund EG, Jovine L, Elofsson A, Benesch JLP, Landreh M

Protein science : a publication of the Protein Society · Year: 2022 · PMID: 35634779 · Citations: 21 · Source: pubmed

Author Correction: Improved prediction of protein-protein interactions using AlphaFold2

Bryant P, Pozzati G, Elofsson A

Nature communications · Year: 2022 · PMID: 35332153 · Source: pubmed

Improved prediction of protein-protein interactions using AlphaFold2

Bryant P, Pozzati G, Elofsson A

Nature communications · Year: 2022 · PMID: 35273146 · Citations: 1162 · Source: pubmed

Scoring of protein-protein docking models utilizing predicted interface residues

Pozzati G, Kundrotas P, Elofsson A

Proteins · Year: 2022 · PMID: 35246997 · Citations: 8 · Source: pubmed

The relationship between ageing and changes in the human blood and brain methylomes

Bryant P, Elofsson A

NAR genomics and bioinformatics · Year: 2022 · PMID: 35118376 · Citations: 3 · Source: pubmed

Intra-Helical Salt Bridge Contribution to Membrane Protein Insertion

Duart G, Lamb J, Ortiz-Mateu J, Elofsson A, Mingarro I

Journal of molecular biology · Year: 2022 · PMID: 35093395 · Citations: 16 · Source: pubmed

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation

Quaglia F, Mészáros B, Salladini E, Hatos A, Pancsa R, Chemes LB, Pajkos M, Lazar T, Peña-Díaz S, Santos J, Ács V, Farahi N, Fichó E, Aspromonte MC, Bassot C, Chasapi A, Davey NE, Davidović R, Dobson L, Elofsson A, et al.

Nucleic acids research · Year: 2022 · PMID: 34850135 · Citations: 184 · Source: pubmed

Limits and potential of combined folding and docking

Pozzati G, Zhu W, Bassot C, Lamb J, Kundrotas P, Elofsson A

Bioinformatics (Oxford, England) · Year: 2022 · PMID: 34788800 · Citations: 29 · Source: pubmed

Toward Characterising the Cellular 3D-Proteome

Elofsson A

Frontiers in bioinformatics · Year: 2021 · PMID: 36353353 · Citations: 5 · Source: pubmed

Protein sequence-to-structure learning: Is this the end(-to-end revolution)?

Laine E, Eismann S, Elofsson A, Grudinin S

Proteins · Year: 2021 · PMID: 34519095 · Citations: 47 · Source: pubmed

The evolutionary history of topological variations in the CPA/AT transporters

Sudha G, Bassot C, Lamb J, Shu N, Huang Y, Elofsson A

PLoS computational biology · Year: 2021 · PMID: 34403419 · Citations: 4 · Source: pubmed

pyconsFold: a fast and easy tool for modeling and docking using distance predictions

Lamb J, Elofsson A

Bioinformatics (Oxford, England) · Year: 2021 · PMID: 34240102 · Citations: 8 · Source: pubmed

GCSENet: A GCN, CNN and SENet ensemble model for microRNA-disease association prediction

Li Z, Jiang K, Qin S, Zhong Y, Elofsson A

PLoS computational biology · Year: 2021 · PMID: 34081706 · Citations: 26 · Source: pubmed

Accurate contact-based modelling of repeat proteins predicts the structure of new repeats protein families

Bassot C, Elofsson A

PLoS computational biology · Year: 2021 · PMID: 33857128 · Citations: 9 · Source: pubmed

GraphQA: protein model quality assessment using graph convolutional networks

Baldassarre F, Menéndez Hurtado D, Elofsson A, Azizpour H

Bioinformatics (Oxford, England) · Year: 2021 · PMID: 32780838 · Citations: 155 · Source: pubmed

Estimating the impact of mobility patterns on COVID-19 infection rates in 11 European countries

Bryant P, Elofsson A

PeerJ · Year: 2020 · PMID: 32983643 · Citations: 75 · Source: pubmed

Using Micro- and Macro-Level Network Metrics Unveils Top Communicative Gene Modules in Psoriasis

Naderi R, Saadati Mollaei H, Elofsson A, Hosseini Ashtiani S

Genes · Year: 2020 · PMID: 32785106 · Citations: 4 · Source: pubmed

A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community)

Orengo C, Velankar S, Wodak S, Zoete V, Bonvin AMJJ, Elofsson A, Feenstra KA, Gerloff DL, Hamelryck T, Hancock JM, Helmer-Citterich M, Hospital A, Orozco M, Perrakis A, Rarey M, Soares C, Sussman JL, Thornton JM, Tuffery P, Tusnady G, et al.

F1000Research · Year: 2020 · PMID: 32566135 · Citations: 16 · Source: pubmed

Decomposing Structural Response Due to Sequence Changes in Protein Domains with Machine Learning

Bryant P, Elofsson A

Journal of molecular biology · Year: 2020 · PMID: 32485208 · Citations: 2 · Source: pubmed

Protein Contact Map Prediction Based on ResNet and DenseNet

Li Z, Lin Y, Elofsson A, Yao Y

BioMed research international · Year: 2020 · PMID: 32337273 · Citations: 47 · Source: pubmed

A New Census of Protein Tandem Repeats and Their Relationship with Intrinsic Disorder

Delucchi M, Schaper E, Sachenkova O, Elofsson A, Anisimova M

Genes · Year: 2020 · PMID: 32283633 · Citations: 65 · Source: pubmed

DisProt: intrinsic protein disorder annotation in 2020

Hatos A, Hajdu-Soltész B, Monzon AM, Palopoli N, Álvarez L, Aykac-Fas B, Bassot C, Benítez GI, Bevilacqua M, Chasapi A, Chemes L, Davey NE, Davidović R, Dunker AK, Elofsson A, Gobeill J, Foutel NSG, Sudha G, Guharoy M, Horvath T, et al.

Nucleic acids research · Year: 2020 · PMID: 31713636 · Citations: 290 · Source: pubmed

An intrinsically disordered proteins community for ELIXIR

Davey NE, Babu MM, Blackledge M, Bridge A, Capella-Gutierrez S, Dosztanyi Z, Drysdale R, Edwards RJ, Elofsson A, Felli IC, Gibson TJ, Gutmanas A, Hancock JM, Harrow J, Higgins D, Jeffries CM, Le Mercier P, Mészáros B, Necci M, Notredame C, et al.

F1000Research · Year: 2019 · PMID: 31824649 · Citations: 19 · Source: pubmed

Detecting sequence signals in targeting peptides using deep learning

Almagro Armenteros JJ, Salvatore M, Emanuelsson O, Winther O, von Heijne G, Elofsson A, Nielsen H

Life science alliance · Year: 2019 · PMID: 31570514 · Citations: 1108 · Source: pubmed

Structural basis for the interaction of the chaperone Cbp3 with newly synthesized cytochrome b during mitochondrial respiratory chain assembly

Ndi M, Masuyer G, Dawitz H, Carlström A, Michel M, Elofsson A, Rapp M, Stenmark P, Ott M

The Journal of biological chemistry · Year: 2019 · PMID: 31537648 · Citations: 12 · Source: pubmed

Why do eukaryotic proteins contain more intrinsically disordered regions?

Basile W, Salvatore M, Bassot C, Elofsson A

PLoS computational biology · Year: 2019 · PMID: 31329574 · Citations: 121 · Source: pubmed

Estimation of model accuracy in CASP13

Cheng J, Choe MH, Elofsson A, Han KS, Hou J, Maghrabi AHA, McGuffin LJ, Menéndez-Hurtado D, Olechnovič K, Schwede T, Studer G, Uziela K, Venclovas Č, Wallner B

Proteins · Year: 2019 · PMID: 31265154 · Citations: 107 · Source: pubmed

Using PconsC4 and PconsFold2 to Predict Protein Structure

Bassot C, Menendez Hurtado D, Elofsson A

Current protocols in bioinformatics · Year: 2019 · PMID: 31063641 · Citations: 7 · Source: pubmed

PconsFam: An Interactive Database of Structure Predictions of Pfam Families

Lamb J, Jarmolinska AI, Michel M, Menéndez-Hurtado D, Sulkowska JI, Elofsson A

Journal of molecular biology · Year: 2019 · PMID: 30796988 · Citations: 17 · Source: pubmed

Ten simple rules on how to create open access and reproducible molecular simulations of biological systems

Elofsson A, Hess B, Lindahl E, Onufriev A, van der Spoel D, Wallqvist A

PLoS computational biology · Year: 2019 · PMID: 30653494 · Citations: 44 · Source: pubmed

PconsC4: fast, accurate and hassle-free contact predictions

Michel M, Menéndez Hurtado D, Elofsson A

Bioinformatics (Oxford, England) · Year: 2019 · PMID: 30590407 · Citations: 107 · Source: pubmed

Improved protein model quality assessments by changing the target function

Uziela K, Menéndez Hurtado D, Shu N, Wallner B, Elofsson A

Proteins · Year: 2018 · PMID: 29524250 · Citations: 22 · Source: pubmed

Topology of membrane proteins-predictions, limitations and variations

Tsirigos KD, Govindarajan S, Bassot C, Västermark Å, Lamb J, Shu N, Elofsson A

Current opinion in structural biology · Year: 2018 · PMID: 29100082 · Citations: 43 · Source: pubmed

Methods for estimation of model accuracy in CASP12

Elofsson A, Joo K, Keasar C, Lee J, Maghrabi AHA, Manavalan B, McGuffin LJ, Ménendez Hurtado D, Mirabello C, Pilstål R, Sidi T, Uziela K, Wallner B

Proteins · Year: 2018 · PMID: 28975666 · Citations: 34 · Source: pubmed

The SubCons webserver: A user friendly web interface for state-of-the-art subcellular localization prediction

Salvatore M, Shu N, Elofsson A

Protein science : a publication of the Protein Society · Year: 2018 · PMID: 28901589 · Citations: 18 · Source: pubmed

Large-scale structure prediction by improved contact predictions and model quality assessment

Michel M, Menéndez Hurtado D, Uziela K, Elofsson A

Bioinformatics (Oxford, England) · Year: 2017 · PMID: 28881974 · Citations: 37 · Source: pubmed

Predicting accurate contacts in thousands of Pfam domain families using PconsC3

Michel M, Skwark MJ, Menéndez Hurtado D, Ekeberg M, Elofsson A

Bioinformatics (Oxford, England) · Year: 2017 · PMID: 28535189 · Citations: 47 · Source: pubmed

SubCons: a new ensemble method for improved human subcellular localization predictions

Salvatore M, Warholm P, Shu N, Basile W, Elofsson A

Bioinformatics (Oxford, England) · Year: 2017 · PMID: 28407043 · Citations: 34 · Source: pubmed

High GC content causes orphan proteins to be intrinsically disordered

Basile W, Sachenkova O, Light S, Elofsson A

PLoS computational biology · Year: 2017 · PMID: 28355220 · Citations: 82 · Source: pubmed

GWAR: robust analysis and meta-analysis of genome-wide association studies

Dimou NL, Tsirigos KD, Elofsson A, Bagos PG

Bioinformatics (Oxford, England) · Year: 2017 · PMID: 28108451 · Citations: 16 · Source: pubmed

ProQ3D: improved model quality assessments using deep learning

Uziela K, Menéndez Hurtado D, Shu N, Wallner B, Elofsson A

Bioinformatics (Oxford, England) · Year: 2017 · PMID: 28052925 · Citations: 204 · Source: pubmed

Corrigendum: DisProt 7.0: a major update of the database of disordered proteins

Piovesan D, Tabaro F, Mičetić I, Necci M, Quaglia F, Oldfield CJ, Aspromonte MC, Davey NE, Davidović R, Dosztányi Z, Elofsson A, Gasparini A, Hatos A, Kajava AV, Kalmar L, Leonardi E, Lazar T, Macedo-Ribeiro S, Macossay-Castillo M, Meszaros A, et al.

Nucleic acids research · Year: 2017 · PMID: 27965415 · Source: pubmed

DisProt 7.0: a major update of the database of disordered proteins

Piovesan D, Tabaro F, Mičetić I, Necci M, Quaglia F, Oldfield CJ, Aspromonte MC, Davey NE, Davidović R, Dosztányi Z, Elofsson A, Gasparini A, Hatos A, Kajava AV, Kalmar L, Leonardi E, Lazar T, Macedo-Ribeiro S, Macossay-Castillo M, Meszaros A, et al.

Nucleic acids research · Year: 2017 · PMID: 27899601 · Citations: 354 · Source: pubmed

ProQ3: Improved model quality assessments using Rosetta energy terms

Uziela K, Shu N, Wallner B, Elofsson A

Scientific reports · Year: 2016 · PMID: 27698390 · Citations: 125 · Source: pubmed

PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins

Tsirigos KD, Elofsson A, Bagos PG

Bioinformatics (Oxford, England) · Year: 2016 · PMID: 27587687 · Citations: 96 · Source: pubmed

Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins

Hayat S, Peters C, Shu N, Tsirigos KD, Elofsson A

Bioinformatics (Oxford, England) · Year: 2016 · PMID: 26794316 · Citations: 92 · Source: pubmed

Improved topology prediction using the terminal hydrophobic helices rule

Peters C, Tsirigos KD, Shu N, Elofsson A

Bioinformatics (Oxford, England) · Year: 2016 · PMID: 26644416 · Citations: 66 · Source: pubmed

Molecular architecture of the active mitochondrial protein gate

Shiota T, Imai K, Qiu J, Hewitt VL, Tan K, Shen HH, Sakiyama N, Fukasawa Y, Hayat S, Kamiya M, Elofsson A, Tomii K, Horton P, Wiedemann N, Pfanner N, Lithgow T, Endo T

Science (New York, N.Y.) · Year: 2015 · PMID: 26404837 · Citations: 276 · Source: pubmed

Marginally hydrophobic transmembrane α-helices shaping membrane protein folding

De Marothy MT, Elofsson A

Protein science : a publication of the Protein Society · Year: 2015 · PMID: 25970811 · Citations: 59 · Source: pubmed

The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides

Tsirigos KD, Peters C, Shu N, Käll L, Elofsson A

Nucleic acids research · Year: 2015 · PMID: 25969446 · Citations: 1050 · Source: pubmed

Enhanced Protein Production in Escherichia coli by Optimization of Cloning Scars at the Vector-Coding Sequence Junction

Mirzadeh K, Martínez V, Toddo S, Guntur S, Herrgård MJ, Elofsson A, Nørholm MH, Daley DO

ACS synthetic biology · Year: 2015 · PMID: 25951437 · Citations: 77 · Source: pubmed

All-atom 3D structure prediction of transmembrane β-barrel proteins from sequences

Hayat S, Sander C, Marks DS, Elofsson A

Proceedings of the National Academy of Sciences of the United States of America · Year: 2015 · PMID: 25858953 · Citations: 66 · Source: pubmed

Improved contact predictions using the recognition of protein like contact patterns

Skwark MJ, Raimondi D, Michel M, Elofsson A

PLoS computational biology · Year: 2014 · PMID: 25375897 · Citations: 190 · Source: pubmed

PconsFold: improved contact predictions improve protein models

Michel M, Hayat S, Skwark MJ, Sander C, Marks DS, Elofsson A

Bioinformatics (Oxford, England) · Year: 2014 · PMID: 25161237 · Citations: 115 · Source: pubmed

Orphans and new gene origination, a structural and evolutionary perspective

Light S, Basile W, Elofsson A

Current opinion in structural biology · Year: 2014 · PMID: 24934869 · Citations: 37 · Source: pubmed

The positive inside rule is stronger when followed by a transmembrane helix

Virkki MT, Peters C, Nilsson D, Sörensen T, Cristobal S, Wallner B, Elofsson A

Journal of molecular biology · Year: 2014 · PMID: 24927974 · Citations: 19 · Source: pubmed

Large tilts in transmembrane helices can be induced during tertiary structure formation

Virkki M, Boekel C, Illergård K, Peters C, Shu N, Tsirigos KD, Elofsson A, von Heijne G, Nilsson I

Journal of molecular biology · Year: 2014 · PMID: 24793448 · Citations: 13 · Source: pubmed

Folding of Aquaporin 1: multiple evidence that helix 3 can shift out of the membrane core

Virkki MT, Agrawal N, Edsbäcker E, Cristobal S, Elofsson A, Kauko A

Protein science : a publication of the Protein Society · Year: 2014 · PMID: 24777974 · Citations: 25 · Source: pubmed

Why is the biological hydrophobicity scale more accurate than earlier experimental hydrophobicity scales?

Peters C, Elofsson A

Proteins · Year: 2014 · PMID: 24753217 · Citations: 31 · Source: pubmed

Protein expansion is primarily due to indels in intrinsically disordered regions

Light S, Sagit R, Sachenkova O, Ekman D, Elofsson A

Molecular biology and evolution · Year: 2013 · PMID: 24037790 · Citations: 99 · Source: pubmed

PconsD: ultra rapid, accurate model quality assessment for protein structure prediction

Skwark MJ, Elofsson A

Bioinformatics (Oxford, England) · Year: 2013 · PMID: 23677942 · Citations: 34 · Source: pubmed

PconsC: combination of direct information methods and alignments improves contact prediction

Skwark MJ, Abdel-Rehim A, Elofsson A

Bioinformatics (Oxford, England) · Year: 2013 · PMID: 23658418 · Citations: 100 · Source: pubmed

The impact of splicing on protein domain architecture

Light S, Elofsson A

Current opinion in structural biology · Year: 2013 · PMID: 23562110 · Citations: 54 · Source: pubmed

Membrane protein shaving with thermolysin can be used to evaluate topology predictors

Bendz M, Skwark M, Nilsson D, Granholm V, Cristobal S, Käll L, Elofsson A

Proteomics · Year: 2013 · PMID: 23512833 · Citations: 15 · Source: pubmed

Long indels are disordered: a study of disorder and indels in homologous eukaryotic proteins

Light S, Sagit R, Ekman D, Elofsson A

Biochimica et biophysica acta · Year: 2013 · PMID: 23333420 · Citations: 42 · Source: pubmed

Ligand binding properties of human galanin receptors

Jurkowski W, Yazdi S, Elofsson A

Molecular membrane biology · Year: 2013 · PMID: 23237663 · Citations: 26 · Source: pubmed

Charge pair interactions in transmembrane helices and turn propensity of the connecting sequence promote helical hairpin insertion

Bañó-Polo M, Martínez-Gil L, Wallner B, Nieva JL, Elofsson A, Mingarro I

Journal of molecular biology · Year: 2013 · PMID: 23228331 · Citations: 42 · Source: pubmed

Localization prediction and structure-based in silico analysis of bacterial proteins: with emphasis on outer membrane proteins

Imai K, Hayat S, Sakiyama N, Fujita N, Tomii K, Elofsson A, Horton P

Methods in molecular biology (Clifton, N.J.) · Year: 2013 · PMID: 23192545 · Citations: 6 · Source: pubmed

Ranking models of transmembrane β-barrel proteins using Z-coordinate predictions

Hayat S, Elofsson A

Bioinformatics (Oxford, England) · Year: 2012 · PMID: 22689784 · Citations: 14 · Source: pubmed

A guideline to proteome-wide α-helical membrane protein topology predictions

Tsirigos KD, Hennerdal A, Käll L, Elofsson A

Proteomics · Year: 2012 · PMID: 22685073 · Citations: 42 · Source: pubmed

The interface of protein structure, protein biophysics, and molecular evolution

Liberles DA, Teichmann SA, Bahar I, Bastolla U, Bloom J, Bornberg-Bauer E, Colwell LJ, de Koning AP, Dokholyan NV, Echave J, Elofsson A, Gerloff DL, Goldstein RA, Grahnen JA, Holder MT, Lakner C, Lartillot N, Lovell SC, Naylor G, Perica T, et al.

Protein science : a publication of the Protein Society · Year: 2012 · PMID: 22528593 · Citations: 258 · Source: pubmed

The evolution of filamin-a protein domain repeat perspective

Light S, Sagit R, Ithychanda SS, Qin J, Elofsson A

Journal of structural biology · Year: 2012 · PMID: 22414427 · Citations: 30 · Source: pubmed

BOCTOPUS: improved topology prediction of transmembrane β barrel proteins

Hayat S, Elofsson A

Bioinformatics (Oxford, England) · Year: 2012 · PMID: 22247276 · Citations: 100 · Source: pubmed

Molecular recognition of a single sphingolipid species by a protein's transmembrane domain

Contreras FX, Ernst AM, Haberkant P, Björkholm P, Lindahl E, Gönen B, Tischer C, Elofsson A, von Heijne G, Thiele C, Pepperkok R, Wieland F, Brügger B

Nature · Year: 2012 · PMID: 22230960 · Citations: 434 · Source: pubmed

Manipulating the genetic code for membrane protein production: what have we learnt so far?

Nørholm MH, Light S, Virkki MT, Elofsson A, von Heijne G, Daley DO

Biochimica et biophysica acta · Year: 2012 · PMID: 21884679 · Citations: 44 · Source: pubmed

An introduction to membrane proteins

Hedin LE, Illergård K, Elofsson A

Journal of proteome research · Year: 2011 · PMID: 21815691 · Citations: 147 · Source: pubmed

The complement regulator CD46 is bactericidal to Helicobacter pylori and blocks urease activity

Basmarke-Wehelie R, Sjölinder H, Jurkowski W, Elofsson A, Arnqvist A, Engstrand L, Hagner M, Wallin E, Guan N, Kuranasekera H, Aro H, Jonsson AB

Gastroenterology · Year: 2011 · PMID: 21699774 · Citations: 14 · Source: pubmed

KalignP: improved multiple sequence alignments using position specific gap penalties in Kalign2

Shu N, Elofsson A

Bioinformatics (Oxford, England) · Year: 2011 · PMID: 21505030 · Citations: 9 · Source: pubmed

Rapid membrane protein topology prediction

Hennerdal A, Elofsson A

Bioinformatics (Oxford, England) · Year: 2011 · PMID: 21493661 · Citations: 67 · Source: pubmed

Improved predictions by Pcons.net using multiple templates

Larsson P, Skwark MJ, Wallner B, Elofsson A

Bioinformatics (Oxford, England) · Year: 2011 · PMID: 21149277 · Citations: 19 · Source: pubmed

Why are polar residues within the membrane core evolutionary conserved?

Illergård K, Kauko A, Elofsson A

Proteins · Year: 2011 · PMID: 20938980 · Citations: 67 · Source: pubmed

Genomic evolution and complexity of the Anaphase-promoting Complex (APC) in land plants

Lima Mde F, Eloy NB, Pegoraro C, Sagit R, Rojas C, Bretz T, Vargas L, Elofsson A, de Oliveira AC, Hemerly AS, Ferreira PC

BMC plant biology · Year: 2010 · PMID: 21087491 · Citations: 40 · Source: pubmed

Internal duplications in α-helical membrane protein topologies are common but the nonduplicated forms are rare

Hennerdal A, Falk J, Lindahl E, Elofsson A

Protein science : a publication of the Protein Society · Year: 2010 · PMID: 20882639 · Citations: 23 · Source: pubmed

Determining receptor-ligand interaction of human galanin receptor type 3

Runesson J, Sollenberg UE, Jurkowski W, Yazdi S, Eriksson EE, Elofsson A, Langel U

Neurochemistry international · Year: 2010 · PMID: 20817064 · Citations: 20 · Source: pubmed

Nebulin: a study of protein repeat evolution

Björklund AK, Light S, Sagit R, Elofsson A

Journal of molecular biology · Year: 2010 · PMID: 20643138 · Citations: 58 · Source: pubmed

MPRAP: an accessibility predictor for a-helical transmembrane proteins that performs well inside and outside the membrane

Illergård K, Callegari S, Elofsson A

BMC bioinformatics · Year: 2010 · PMID: 20565847 · Citations: 44 · Source: pubmed

Repositioning of transmembrane alpha-helices during membrane protein folding

Kauko A, Hedin LE, Thebaud E, Cristobal S, Elofsson A, von Heijne G

Journal of molecular biology · Year: 2010 · PMID: 20109468 · Citations: 88 · Source: pubmed

Identifying and quantifying orphan protein sequences in fungi

Ekman D, Elofsson A

Journal of molecular biology · Year: 2010 · PMID: 19944701 · Citations: 80 · Source: pubmed

Membrane insertion of marginally hydrophobic transmembrane helices depends on sequence context

Hedin LE, Ojemalm K, Bernsel A, Hennerdal A, Illergård K, Enquist K, Kauko A, Cristobal S, von Heijne G, Lerch-Bader M, Nilsson I, Elofsson A

Journal of molecular biology · Year: 2010 · PMID: 19931281 · Citations: 129 · Source: pubmed

Assessment of global and local model quality in CASP8 using Pcons and ProQ

Larsson P, Skwark MJ, Wallner B, Elofsson A

Proteins · Year: 2009 · PMID: 19544566 · Citations: 83 · Source: pubmed

Structure is three to ten times more conserved than sequence--a study of structural response in protein cores

Illergård K, Ardell DH, Elofsson A

Proteins · Year: 2009 · PMID: 19507241 · Citations: 696 · Source: pubmed

TOPCONS: consensus prediction of membrane protein topology

Bernsel A, Viklund H, Hennerdal A, Elofsson A

Nucleic acids research · Year: 2009 · PMID: 19429891 · Citations: 643 · Source: pubmed

SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology

Viklund H, Bernsel A, Skwark M, Elofsson A

Bioinformatics (Oxford, England) · Year: 2008 · PMID: 18945683 · Citations: 287 · Source: pubmed

Quantitative assessment of the structural bias in protein-protein interaction assays

Björklund AK, Light S, Hedin L, Elofsson A

Proteomics · Year: 2008 · PMID: 18924110 · Citations: 30 · Source: pubmed

Arrangements in the modular evolution of proteins

Moore AD, Björklund AK, Ekman D, Bornberg-Bauer E, Elofsson A

Trends in biochemical sciences · Year: 2008 · PMID: 18656364 · Citations: 274 · Source: pubmed

Coils in the membrane core are conserved and functionally important

Kauko A, Illergård K, Elofsson A

Journal of molecular biology · Year: 2008 · PMID: 18511074 · Citations: 45 · Source: pubmed

Prediction of membrane-protein topology from first principles

Bernsel A, Viklund H, Falk J, Lindahl E, von Heijne G, Elofsson A

Proceedings of the National Academy of Sciences of the United States of America · Year: 2008 · PMID: 18477697 · Citations: 366 · Source: pubmed

OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar

Viklund H, Elofsson A

Bioinformatics (Oxford, England) · Year: 2008 · PMID: 18474507 · Citations: 482 · Source: pubmed

Using multiple templates to improve quality of homology models in automated homology modeling

Larsson P, Wallner B, Lindahl E, Elofsson A

Protein science : a publication of the Protein Society · Year: 2008 · PMID: 18441233 · Citations: 212 · Source: pubmed

Estimating the length of transmembrane helices using Z-coordinate predictions

Papaloukas C, Granseth E, Viklund H, Elofsson A

Protein science : a publication of the Protein Society · Year: 2008 · PMID: 18096645 · Citations: 28 · Source: pubmed

Remote homology detection of integral membrane proteins using conserved sequence features

Bernsel A, Viklund H, Elofsson A

Proteins · Year: 2008 · PMID: 18076048 · Citations: 14 · Source: pubmed

Prediction of global and local model quality in CASP7 using Pcons and ProQ

Wallner B, Elofsson A

Proteins · Year: 2007 · PMID: 17894353 · Citations: 121 · Source: pubmed

Quantification of the elevated rate of domain rearrangements in metazoa

Ekman D, Björklund AK, Elofsson A

Journal of molecular biology · Year: 2007 · PMID: 17689563 · Citations: 116 · Source: pubmed

Pcons.net: protein structure prediction meta server

Wallner B, Larsson P, Elofsson A

Nucleic acids research · Year: 2007 · PMID: 17584798 · Citations: 78 · Source: pubmed

Membrane protein structure: prediction versus reality

Elofsson A, von Heijne G

Annual review of biochemistry · Year: 2007 · PMID: 17579561 · Citations: 329 · Source: pubmed

Evaluating dosage compensation as a cause of duplicate gene retention in Paramecium tetraurelia

Hughes T, Ekman D, Ardawatia H, Elofsson A, Liberles DA

Genome biology · Year: 2007 · PMID: 17521457 · Citations: 53 · Source: pubmed

Expansion of protein domain repeats

Björklund AK, Ekman D, Elofsson A

PLoS computational biology · Year: 2006 · PMID: 16933986 · Citations: 306 · Source: pubmed

ZPRED: predicting the distance to the membrane center for residues in alpha-helical membrane proteins

Granseth E, Viklund H, Elofsson A

Bioinformatics (Oxford, England) · Year: 2006 · PMID: 16873471 · Citations: 65 · Source: pubmed

Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps

Ohlson T, Aggarwal V, Elofsson A, MacCallum RM

BMC bioinformatics · Year: 2006 · PMID: 16869963 · Citations: 14 · Source: pubmed

Structural classification and prediction of reentrant regions in alpha-helical transmembrane proteins: application to complete genomes

Viklund H, Granseth E, Elofsson A

Journal of molecular biology · Year: 2006 · PMID: 16860824 · Citations: 115 · Source: pubmed

PONGO: a web server for multiple predictions of all-alpha transmembrane proteins

Amico M, Finelli M, Rossi I, Zauli A, Elofsson A, Viklund H, von Heijne G, Jones D, Krogh A, Fariselli P, Luigi Martelli P, Casadio R

Nucleic acids research · Year: 2006 · PMID: 16844984 · Citations: 49 · Source: pubmed

What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae?

Ekman D, Light S, Björklund AK, Elofsson A

Genome biology · Year: 2006 · PMID: 16780599 · Citations: 457 · Source: pubmed

Identification of correct regions in protein models using structural, alignment, and consensus information

Wallner B, Elofsson A

Protein science : a publication of the Protein Society · Year: 2006 · PMID: 16522791 · Citations: 239 · Source: pubmed

Preferential attachment in the evolution of metabolic networks

Light S, Kraulis P, Elofsson A

BMC genomics · Year: 2005 · PMID: 16281983 · Citations: 99 · Source: pubmed

ProfNet, a method to derive profile-profile alignment scoring functions that improves the alignments of distantly related proteins

Ohlson T, Elofsson A

BMC bioinformatics · Year: 2005 · PMID: 16225676 · Citations: 27 · Source: pubmed

Pcons5: combining consensus, structural evaluation and fold recognition scores

Wallner B, Elofsson A

Bioinformatics (Oxford, England) · Year: 2005 · PMID: 16204344 · Citations: 127 · Source: pubmed

Domain rearrangements in protein evolution

Björklund AK, Ekman D, Light S, Frey-Skött J, Elofsson A

Journal of molecular biology · Year: 2005 · PMID: 16198373 · Citations: 243 · Source: pubmed

Tertiary windowing to detect positive diversifying selection

Berglund AC, Wallner B, Elofsson A, Liberles DA

Journal of molecular evolution · Year: 2005 · PMID: 15883884 · Citations: 46 · Source: pubmed

All are not equal: a benchmark of different homology modeling programs

Wallner B, Elofsson A

Protein science : a publication of the Protein Society · Year: 2005 · PMID: 15840834 · Citations: 299 · Source: pubmed

Multi-domain proteins in the three kingdoms of life: orphan domains and other unassigned regions

Ekman D, Björklund AK, Frey-Skött J, Elofsson A

Journal of molecular biology · Year: 2005 · PMID: 15808866 · Citations: 301 · Source: pubmed

A study of the membrane-water interface region of membrane proteins

Granseth E, von Heijne G, Elofsson A

Journal of molecular biology · Year: 2005 · PMID: 15663952 · Citations: 212 · Source: pubmed

Profile-profile methods provide improved fold-recognition: a study of different profile-profile alignment methods

Ohlson T, Wallner B, Elofsson A

Proteins · Year: 2004 · PMID: 15326603 · Citations: 132 · Source: pubmed

Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information

Viklund H, Elofsson A

Protein science : a publication of the Protein Society · Year: 2004 · PMID: 15215532 · Citations: 318 · Source: pubmed

Using evolutionary information for the query and target improves fold recognition

Wallner B, Fang H, Ohlson T, Frey-Skött J, Elofsson A

Proteins · Year: 2004 · PMID: 14696196 · Citations: 47 · Source: pubmed

LiveBench-6: large-scale automated evaluation of protein structure prediction servers

Rychlewski L, Fischer D, Elofsson A

Proteins · Year: 2003 · PMID: 14579344 · Citations: 87 · Source: pubmed

Automatic consensus-based fold recognition using Pcons, ProQ, and Pmodeller

Wallner B, Fang H, Elofsson A

Proteins · Year: 2003 · PMID: 14579343 · Citations: 154 · Source: pubmed

CAFASP3: the third critical assessment of fully automated structure prediction methods

Fischer D, Rychlewski L, Dunbrack RL Jr, Ortiz AR, Elofsson A

Proteins · Year: 2003 · PMID: 14579340 · Citations: 153 · Source: pubmed

In silico prediction of the peroxisomal proteome in fungi, plants and animals

Emanuelsson O, Elofsson A, von Heijne G, Cristóbal S

Journal of molecular biology · Year: 2003 · PMID: 12823981 · Citations: 128 · Source: pubmed

3D-Jury: a simple approach to improve protein structure predictions

Ginalski K, Elofsson A, Fischer D, Rychlewski L

Bioinformatics (Oxford, England) · Year: 2003 · PMID: 12761065 · Citations: 921 · Source: pubmed

Can correct protein models be identified?

Wallner B, Elofsson A

Protein science : a publication of the Protein Society · Year: 2003 · PMID: 12717029 · Citations: 863 · Source: pubmed

Prediction of MHC class I binding peptides, using SVMHC

Dönnes P, Elofsson A

BMC bioinformatics · Year: 2002 · PMID: 12225620 · Citations: 369 · Source: pubmed

The salmon genome (and other issues in bioinformatics)

Milchert LE, Liberles DA, Elofsson A

Genome biology · Year: 2002 · PMID: 12184805 · Citations: 4 · Source: pubmed

Improved detection of homologous membrane proteins by inclusion of information from topology predictions

Hedman M, Deloof H, Von Heijne G, Elofsson A

Protein science : a publication of the Protein Society · Year: 2002 · PMID: 11847287 · Citations: 31 · Source: pubmed

A study on protein sequence alignment quality

Elofsson A

Proteins · Year: 2002 · PMID: 11835508 · Citations: 96 · Source: pubmed

LiveBench-2: large-scale automated evaluation of protein structure prediction servers

Bujnicki JM, Elofsson A, Fischer D, Rychlewski L

Proteins · Year: 2001 · PMID: 11835496 · Citations: 101 · Source: pubmed

CAFASP2: the second critical assessment of fully automated structure prediction methods

Fischer D, Elofsson A, Rychlewski L, Pazos F, Valencia A, Rost B, Ortiz AR, Dunbrack RL Jr

Proteins · Year: 2001 · PMID: 11835495 · Citations: 136 · Source: pubmed

Pcons: a neural-network-based consensus predictor that improves fold recognition

Lundström J, Rychlewski L, Bujnicki J, Elofsson A

Protein science : a publication of the Protein Society · Year: 2001 · PMID: 11604541 · Citations: 385 · Source: pubmed

A study of quality measures for protein threading models

Cristobal S, Zemla A, Fischer D, Rychlewski L, Elofsson A

BMC bioinformatics · Year: 2001 · PMID: 11545673 · Citations: 281 · Source: pubmed

Structure prediction meta server

Bujnicki JM, Elofsson A, Fischer D, Rychlewski L

Bioinformatics (Oxford, England) · Year: 2001 · PMID: 11524381 · Citations: 259 · Source: pubmed

LiveBench-1: continuous benchmarking of protein structure prediction servers

Bujnicki JM, Elofsson A, Fischer D, Rychlewski L

Protein science : a publication of the Protein Society · Year: 2001 · PMID: 11266621 · Citations: 141 · Source: pubmed

The 2000 Olympic Games of protein structure prediction; fully automated programs are being evaluated vis-à-vis human teams in the protein structure prediction experiment CAFASP2

Fischer D, Elofsson A, Rychlewski L

Protein engineering · Year: 2000 · PMID: 11112504 · Citations: 24 · Source: pubmed

MaxSub: an automated measure for the assessment of protein structure prediction quality

Siew N, Elofsson A, Rychlewski L, Fischer D

Bioinformatics (Oxford, England) · Year: 2000 · PMID: 11108700 · Citations: 490 · Source: pubmed

Identification of related proteins on family, superfamily and fold level

Lindahl E, Elofsson A

Journal of molecular biology · Year: 2000 · PMID: 10623551 · Citations: 257 · Source: pubmed

Study of the electrostatics treatment in molecular dynamics simulations

Garemyr R, Elofsson A

Proteins · Year: 1999 · PMID: 10591101 · Citations: 36 · Source: pubmed

Turns in transmembrane helices: determination of the minimal length of a "helical hairpin" and derivation of a fine-grained turn propensity scale

Monné M, Nilsson I, Elofsson A, von Heijne G

Journal of molecular biology · Year: 1999 · PMID: 10543969 · Citations: 117 · Source: pubmed

CAFASP-1: critical assessment of fully automated structure prediction methods

Fischer D, Barret C, Bryson K, Elofsson A, Godzik A, Jones D, Karplus KJ, Kelley LA, MacCallum RM, Pawowski K, Rost B, Rychlewski L, Sternberg M

Proteins · Year: 1999 · PMID: 10526371 · Citations: 234 · Source: pubmed

A comparison of sequence and structure protein domain families as a basis for structural genomics

Elofsson A, Sonnhammer EL

Bioinformatics (Oxford, England) · Year: 1999 · PMID: 10383473 · Citations: 91 · Source: pubmed

Hidden Markov models that use predicted secondary structures for fold recognition

Hargbo J, Elofsson A

Proteins · Year: 1999 · PMID: 10373007 · Citations: 113 · Source: pubmed

Interaction of mitochondrial presequences with DnaK and mitochondrial hsp70

Zhang XP, Elofsson A, Andreu D, Glaser E

Journal of molecular biology · Year: 1999 · PMID: 10329135 · Citations: 30 · Source: pubmed

Architecture of beta-barrel membrane proteins: analysis of trimeric porins

Seshadri K, Garemyr R, Wallin E, von Heijne G, Elofsson A

Protein science : a publication of the Protein Society · Year: 1998 · PMID: 9761484 · Citations: 67 · Source: pubmed

Helix-helix packing in a membrane-like environment

Mingarro I, Elofsson A, von Heijne G

Journal of molecular biology · Year: 1997 · PMID: 9325117 · Citations: 46 · Source: pubmed

Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method

Cserzö M, Wallin E, Simon I, von Heijne G, Elofsson A

Protein engineering · Year: 1997 · PMID: 9278280 · Citations: 1385 · Source: pubmed

Architecture of helix bundle membrane proteins: an analysis of cytochrome c oxidase from bovine mitochondria

Wallin E, Tsukihara T, Yoshikawa S, von Heijne G, Elofsson A

Protein science : a publication of the Protein Society · Year: 1997 · PMID: 9098890 · Citations: 193 · Source: pubmed

Assessing the performance of fold recognition methods by means of a comprehensive benchmark

Fischer D, Elofsson A, Rice D, Eisenberg D

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · Year: 1996 · PMID: 9390240 · Citations: 191 · Source: pubmed

A study of combined structure/sequence profiles

Elofsson A, Fischer D, Rice DW, Le Grand SM, Eisenberg D

Folding & design · Year: 1996 · PMID: 9080191 · Citations: 72 · Source: pubmed

Local moves: an efficient algorithm for simulation of protein folding

Elofsson A, Le Grand SM, Eisenberg D

Proteins · Year: 1995 · PMID: 8539252 · Citations: 87 · Source: pubmed

How consistent are molecular dynamics simulations? Comparing structure and dynamics in reduced and oxidized Escherichia coli thioredoxin

Elofsson A, Nilsson L

Journal of molecular biology · Year: 1993 · PMID: 8411178 · Citations: 106 · Source: pubmed

Site specific point mutation changes specificity: a molecular modeling study by free energy simulations and enzyme kinetics of the thermodynamics in ribonuclease T1 substrate interactions

Elofsson A, Kulinski T, Rigler R, Nilsson L

Proteins · Year: 1993 · PMID: 8265564 · Citations: 10 · Source: pubmed

Motion of aromatic side chains, picosecond fluorescence, and internal energy transfer in Escherichia coli thioredoxin studied by site-directed mutagenesis, time-resolved fluorescence spectroscopy, and molecular dynamics simulations

Elofsson A, Rigler R, Nilsson L, Roslund J, Krause G, Holmgren A

Biochemistry · Year: 1991 · PMID: 1911751 · Source: pubmed

Studies on somatostatin with time-resolved spectroscopy and molecular dynamics simulations

Elofsson A, Nilsson L, Rigler R

International journal of peptide and protein research · Year: 1990 · PMID: 1980672 · Citations: 5 · Source: pubmed